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claude-codescience

Babysitter fusion-gene-detector

Gene fusion detection skill for oncology applications with multiple caller integration

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/fusion-gene-detector" ~/.claude/skills/a5c-ai-babysitter-fusion-gene-detector && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/fusion-gene-detector/SKILL.md
tags
#gene-fusion#oncology#rna-seq#clinical-genomics#fusion-calling
source content

Fusion Gene Detector Skill

Purpose

Enable gene fusion detection for oncology applications with multiple caller integration.

Capabilities

  • RNA-based fusion calling
  • DNA-based fusion detection
  • Multi-caller consensus
  • Visualization of fusion events
  • Known fusion annotation
  • Clinical actionability assessment

Usage Guidelines

  • Use multiple callers for sensitivity
  • Build consensus from different algorithms
  • Annotate with known fusion databases
  • Visualize fusion breakpoints
  • Assess clinical actionability
  • Document caller combinations

Dependencies

  • STAR-Fusion
  • Arriba
  • FusionCatcher

Process Integration

  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)