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Babysitter humann-functional-profiler

HUMAnN functional profiling skill for metagenomic pathway analysis

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/humann-functional-profiler" ~/.claude/skills/a5c-ai-babysitter-humann-functional-profiler && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/humann-functional-profiler/SKILL.md
tags
#metagenomics#functional#pathway#metabolism#bioinformatics
source content

HUMAnN Functional Profiler Skill

Purpose

Provide HUMAnN functional profiling for metagenomic pathway analysis.

Capabilities

  • Gene family quantification
  • MetaCyc pathway abundance
  • UniRef annotation
  • Stratified functional profiles
  • Pathway coverage analysis
  • Custom database integration

Usage Guidelines

  • Run taxonomic profiling first
  • Quantify gene families and pathways
  • Stratify by organism when relevant
  • Analyze pathway coverage
  • Compare functional profiles
  • Document database versions

Dependencies

  • HUMAnN3
  • eggNOG-mapper
  • Prokka

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)