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claude-codescience

Babysitter igv-genome-browser

IGV integration skill for interactive genome visualization and review

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/igv-genome-browser" ~/.claude/skills/a5c-ai-babysitter-igv-genome-browser && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/igv-genome-browser/SKILL.md
tags
#genome-visualization#igv#variant-analysis#bioinformatics#sequence-browser
source content

IGV Genome Browser Skill

Purpose

Enable IGV integration for interactive genome visualization and review.

Capabilities

  • BAM/VCF/BED visualization
  • Batch screenshot generation
  • Session management
  • Track customization
  • Region navigation
  • Multi-sample comparison

Usage Guidelines

  • Load appropriate reference genome
  • Configure tracks for analysis needs
  • Generate batch screenshots for reports
  • Save sessions for reproducibility
  • Navigate to regions of interest
  • Compare multiple samples visually

Dependencies

  • IGV
  • IGV.js
  • JBrowse2

Process Integration

  • Clinical Variant Interpretation (clinical-variant-interpretation)
  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)