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Babysitter kraken2-taxonomic-classifier

Kraken2 taxonomic classification skill for rapid metagenomic read assignment

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier" ~/.claude/skills/a5c-ai-babysitter-kraken2-taxonomic-classifier && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier/SKILL.md
tags
#metagenomics#taxonomy#classification#kraken#bioinformatics
source content

Kraken2 Taxonomic Classifier Skill

Purpose

Provide Kraken2 taxonomic classification for rapid metagenomic read assignment.

Capabilities

  • k-mer based classification
  • Custom database creation
  • Confidence score filtering
  • Bracken abundance estimation
  • Multi-sample reporting
  • Memory-efficient operation

Usage Guidelines

  • Build or download appropriate databases
  • Set confidence thresholds for accuracy
  • Use Bracken for abundance estimation
  • Generate reports for visualization
  • Consider memory requirements
  • Document database versions

Dependencies

  • Kraken2
  • Bracken
  • Centrifuge

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)
  • 16S rRNA Microbiome Analysis (16s-microbiome-analysis)