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claude-codescience

Babysitter pymol-visualizer

PyMOL molecular visualization skill for structure rendering and analysis

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/pymol-visualizer" ~/.claude/skills/a5c-ai-babysitter-pymol-visualizer && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/pymol-visualizer/SKILL.md
tags
#molecular-visualization#structural-biology#pymol#rendering#protein-structure
source content

PyMOL Visualizer Skill

Purpose

Enable PyMOL molecular visualization for structure rendering and analysis.

Capabilities

  • Protein structure visualization
  • Surface representation
  • Binding site highlighting
  • Movie and animation generation
  • Publication-quality images
  • Scripted visualization pipelines

Usage Guidelines

  • Select appropriate representation styles
  • Highlight functionally important regions
  • Generate consistent visualizations
  • Create animations for presentations
  • Export high-resolution images
  • Document visualization parameters

Dependencies

  • PyMOL
  • ChimeraX
  • VMD
  • NGLview

Process Integration

  • Protein Structure Prediction (protein-structure-prediction)
  • Molecular Docking and Virtual Screening (molecular-docking)