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claude-codescience

Babysitter string-network-analyzer

STRING protein interaction network skill for functional enrichment and network visualization

install
source · Clone the upstream repo
git clone https://github.com/a5c-ai/babysitter
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/a5c-ai/babysitter "$T" && mkdir -p ~/.claude/skills && cp -r "$T/library/specializations/domains/science/bioinformatics/skills/string-network-analyzer" ~/.claude/skills/a5c-ai-babysitter-string-network-analyzer && rm -rf "$T"
manifest: library/specializations/domains/science/bioinformatics/skills/string-network-analyzer/SKILL.md
tags
#protein-interaction#network-analysis#functional-enrichment#cytoscape#bioinformatics
source content

STRING Network Analyzer Skill

Purpose

Provide STRING protein interaction network analysis for functional enrichment and network visualization.

Capabilities

  • Protein-protein interaction queries
  • Network clustering
  • Functional enrichment analysis
  • Cytoscape integration
  • Network visualization
  • Interaction confidence scoring

Usage Guidelines

  • Query interactions with appropriate confidence thresholds
  • Cluster networks to identify modules
  • Perform functional enrichment on modules
  • Visualize networks with meaningful layouts
  • Export to Cytoscape for advanced visualization
  • Document confidence thresholds and filters

Dependencies

  • STRING-db
  • Cytoscape
  • NetworkX

Process Integration

  • Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
  • Multi-Omics Data Integration (multi-omics-integration)