install
source · Clone the upstream repo
git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.claude/skills && cp -r "$T/skills/bio-clip-seq-clip-motif-analysis" ~/.claude/skills/freedomintelligence-openclaw-medical-skills-bio-clip-seq-clip-motif-analysis && rm -rf "$T"
OpenClaw · Install into ~/.openclaw/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.openclaw/skills && cp -r "$T/skills/bio-clip-seq-clip-motif-analysis" ~/.openclaw/skills/freedomintelligence-openclaw-medical-skills-bio-clip-seq-clip-motif-analysis && rm -rf "$T"
manifest:
skills/bio-clip-seq-clip-motif-analysis/SKILL.mdsource content
<!--
# COPYRIGHT NOTICE
# This file is part of the "Universal Biomedical Skills" project.
# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
# All Rights Reserved.
#
# This code is proprietary and confidential.
# Unauthorized copying of this file, via any medium is strictly prohibited.
#
# Provenance: Authenticated by MD BABU MIA
-->
name: bio-clip-seq-clip-motif-analysis description: Identify enriched sequence motifs at CLIP-seq binding sites for RBP binding specificity. Use when characterizing the sequence preferences of an RNA-binding protein. tool_type: cli primary_tool: HOMER measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools:
- read_file
- run_shell_command
CLIP Motif Analysis
HOMER De Novo Motifs
# Extract sequences from peaks bedtools getfasta -fi genome.fa -bed peaks.bed -fo peaks.fa # Find enriched motifs findMotifs.pl peaks.fa fasta output_dir \ -len 6,7,8 \ -rna
MEME-ChIP
meme-chip -oc output_dir \ -dna \ peaks.fa
Known Motif Enrichment
# HOMER known motif scan findMotifs.pl peaks.fa fasta output_dir \ -rna \ -known
Related Skills
- clip-peak-calling - Get peaks
- chip-seq/motif-analysis - General motif concepts