install
source · Clone the upstream repo
git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.claude/skills && cp -r "$T/skills/biomaster-workflows" ~/.claude/skills/freedomintelligence-openclaw-medical-skills-biomaster-workflows && rm -rf "$T"
OpenClaw · Install into ~/.openclaw/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.openclaw/skills && cp -r "$T/skills/biomaster-workflows" ~/.openclaw/skills/freedomintelligence-openclaw-medical-skills-biomaster-workflows && rm -rf "$T"
manifest:
skills/biomaster-workflows/SKILL.mdsafety · automated scan (low risk)
This is a pattern-based risk scan, not a security review. Our crawler flagged:
- pip install
Always read a skill's source content before installing. Patterns alone don't mean the skill is malicious — but they warrant attention.
source content
<!--
# COPYRIGHT NOTICE
# This file is part of the "Universal Biomedical Skills" project.
# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
# All Rights Reserved.
#
# This code is proprietary and confidential.
# Unauthorized copying of this file, via any medium is strictly prohibited.
#
# Provenance: Authenticated by MD BABU MIA
-->
name: biomaster-workflows description: Pipeline maestro keywords:
- workflows
- RNAseq
- ChIPseq
- automation
- YAML measurable_outcome: Execute a configured pipeline end-to-end (including QC report + summary) within 24 hours of receiving inputs, logging every tool/parameter. license: MIT metadata: author: BioMaster Team version: "1.0.0" compatibility:
- system: Python 3.9+ allowed-tools:
- run_shell_command
- read_file
BioMaster Workflows
Orchestrate BioMaster’s multi-agent pipelines (RNA-seq, ChIP-seq, single-cell, Hi-C) using the provided configs and repos to deliver reproducible outputs.
Workflow
- Config prep: Populate YAML with tool paths, reference genomes, and workflow selection (
,rnaseq
,chipseq
,singlecell
).hic - Environment:
(or container) prior to running.cd repo && pip install -r requirements.txt - Launch:
(or chosen config) and monitor progress.python repo/run.py --config repo/config.yaml - Error recovery: Let BioMaster agents retry failing stages; review logs for missing reference/index files.
- Output packaging: Collect BAMs/counts/peaks + QC + narrative summary of parameters and runtimes.
Guardrails
- Fail fast when reference files or indices are absent to avoid wasted compute.
- Record tool versions for every stage (alignment, quantification, etc.).
- Require confirmation before deleting intermediates or rerunning destructive steps.
References
- Full workflow descriptions, supported modalities, and repo links reside in
.README.md