OpenClaw-Medical-Skills mcpmed-bioinformatics-server
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
install
source · Clone the upstream repo
git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.claude/skills && cp -r "$T/skills/mcpmed-bioinformatics-server" ~/.claude/skills/freedomintelligence-openclaw-medical-skills-mcpmed-bioinformatics-server && rm -rf "$T"
OpenClaw · Install into ~/.openclaw/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.openclaw/skills && cp -r "$T/skills/mcpmed-bioinformatics-server" ~/.openclaw/skills/freedomintelligence-openclaw-medical-skills-mcpmed-bioinformatics-server && rm -rf "$T"
manifest:
skills/mcpmed-bioinformatics-server/SKILL.mdsource content
MCPmed Bioinformatics Web Services
Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools.
When to Use This Skill
- "Query STRING database for protein-protein interactions via MCP"
- "Fetch dataset metadata from GEO using MCPmed"
- "Access UCSC Cell Browser data through MCP"
Core Capabilities
- GEO Integration: Search and retrieve Gene Expression Omnibus metadata autonomously.
- STRING DB Access: Query protein-protein interaction networks contextually.
- UCSC Cell Browser: Programmatic access to single-cell datasets.
Workflow
- Step 1: Start the MCPmed server to expose the bioinformatics backend tools.
- Step 2: Connect the LLM client using MCP to query the integrated databases.
Example Usage
User: "Query the STRING database for interactions with TP53."
Agent Action:
python3 -m mcpmed.cli query string --gene TP53