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openclawclaude-codeautomation

OpenClaw-Medical-Skills opentrons-protocol-agent

<!--

install
source · Clone the upstream repo
git clone https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.claude/skills && cp -r "$T/skills/opentrons-protocol-agent" ~/.claude/skills/freedomintelligence-openclaw-medical-skills-opentrons-protocol-agent && rm -rf "$T"
OpenClaw · Install into ~/.openclaw/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills "$T" && mkdir -p ~/.openclaw/skills && cp -r "$T/skills/opentrons-protocol-agent" ~/.openclaw/skills/freedomintelligence-openclaw-medical-skills-opentrons-protocol-agent && rm -rf "$T"
manifest: skills/opentrons-protocol-agent/SKILL.md
tags
#robotics#protocol-generation#lab-automation#opentrons#liquid-handling
source content
<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA -->

name: 'opentrons-protocol-agent' description: 'Generates executable Python protocols for Opentrons OT-2 and Flex robots from natural language descriptions.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools:

  • read_file
  • run_shell_command

Opentrons Protocol Agent

The Opentrons Protocol Agent bridges the gap between experimental design and physical execution by translating instructions into Opentrons Python API scripts.

When to Use This Skill

  • When you need to automate a liquid handling task (PCR prep, ELISA, serial dilution).
  • When you have a text description of a lab protocol and need code for the robot.
  • To validate if a requested protocol is feasible with available labware.

Core Capabilities

  1. Protocol Generation: Creates valid 
    .py
    files for OT-2/Flex.
  2. Labware Validation: Checks compatibility of plates and tipracks.
  3. Volume Calculation: Automates liquid transfer math (e.g., dilution factors).

Workflow

  1. Describe: Provide the experiment details (source, destination, volumes).
  2. Generate: The agent uses the 
    opentrons_protocol_template.py
    or internal logic to draft the script.
  3. Review: The user (or a simulator agent) reviews the code for safety.

Example Usage

User: "Create a protocol for 1:2 serial dilution in a 96-well plate."

Agent Action: (Uses an LLM to fill in the template or generate code)

# Agent writes the file to disk
python3 -m opentrons.simulate generated_protocol.py
<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->