Agens matchms

skill_id: matchms name: matchms description: Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms. version: 1.0.0 author: K-Dense Inc. license: Apache-2.0 license tags:

• scientific-agent-skills
• matchms tools: [] permissions: network: true filesystem: false shell: false agents:
• bio_code_agent enabled: true source: scientific-agent-skills entrypoint: entry.py readme: README.md input_schema: {} output_schema: type: object metadata: upstream_repo: K-Dense-AI/scientific-agent-skills upstream_skill: matchms upstream_path: scientific-skills/matchms/SKILL.md upstream_frontmatter: name: matchms description: Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms. license: Apache-2.0 license metadata: skill-author: K-Dense Inc.