Agens pathml

skill_id: pathml name: pathml description: Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler. version: 1.0.0 author: K-Dense Inc. license: GPL-2.0 license tags:

• scientific-agent-skills
• pathml tools: [] permissions: network: false filesystem: false shell: false agents:
• bio_code_agent enabled: true source: scientific-agent-skills entrypoint: entry.py readme: README.md input_schema: {} output_schema: type: object metadata: upstream_repo: K-Dense-AI/scientific-agent-skills upstream_skill: pathml upstream_path: scientific-skills/pathml/SKILL.md upstream_frontmatter: name: pathml description: Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler. license: GPL-2.0 license metadata: skill-author: K-Dense Inc.