Agens phylogenetics

skill_id: phylogenetics name: phylogenetics description: Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies. version: 1.0.0 author: Kuan-lin Huang license: Unknown tags:

• scientific-agent-skills
• phylogenetics tools: [] permissions: network: false filesystem: false shell: false agents:
• bio_code_agent enabled: true source: scientific-agent-skills entrypoint: entry.py readme: README.md input_schema: {} output_schema: type: object metadata: upstream_repo: K-Dense-AI/scientific-agent-skills upstream_skill: phylogenetics upstream_path: scientific-skills/phylogenetics/SKILL.md upstream_frontmatter: name: phylogenetics description: Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies. license: Unknown metadata: skill-author: Kuan-lin Huang