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Agens pysam

skill_id: pysam

install
source · Clone the upstream repo
git clone https://github.com/Gyoungwe/agens
manifest: skills/pysam/skill.yaml
source content

skill_id: pysam name: pysam description: Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines. version: 1.0.0 author: K-Dense Inc. license: MIT license tags:

  • scientific-agent-skills
  • pysam tools: [] permissions: network: false filesystem: false shell: false agents:
  • bio_code_agent enabled: true source: scientific-agent-skills entrypoint: entry.py readme: README.md input_schema: {} output_schema: type: object metadata: upstream_repo: K-Dense-AI/scientific-agent-skills upstream_skill: pysam upstream_path: scientific-skills/pysam/SKILL.md upstream_frontmatter: name: pysam description: Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines. license: MIT license metadata: skill-author: K-Dense Inc.