install
source · Clone the upstream repo
git clone https://github.com/MacPhobos/research-mind
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/MacPhobos/research-mind "$T" && mkdir -p ~/.claude/skills && cp -r "$T/.claude/skills/toolchains-universal-dependency-audit" ~/.claude/skills/macphobos-research-mind-toolchains-universal-dependency-audit && rm -rf "$T"
manifest:
.claude/skills/toolchains-universal-dependency-audit/skill.mdsource content
Dependency Audit Skill
Summary
Systematic workflow for auditing, updating, and cleaning up project dependencies. Covers security vulnerability scanning, outdated package detection, unused dependency removal, and migration from deprecated libraries.
When to Use
- Weekly/monthly dependency maintenance
- After security advisories (CVE announcements)
- Before major releases
- When bundle size increases unexpectedly
- During code reviews for dependency changes
- Onboarding to legacy projects
Quick Audit Process
1. Check Outdated Packages
# npm npm outdated # pnpm pnpm outdated # yarn yarn outdated # pip (Python) pip list --outdated # poetry (Python) poetry show --outdated
2. Security Vulnerability Scan
# npm npm audit npm audit fix # Auto-fix where possible npm audit fix --force # Force major version updates (risky) # pnpm pnpm audit pnpm audit --fix # yarn yarn audit yarn audit --fix # Python pip-audit # Requires: pip install pip-audit safety check # Requires: pip install safety
3. Find Unused Dependencies
# JavaScript/TypeScript npx depcheck # Output example: # Unused dependencies # * lodash # * moment # Unused devDependencies # * @types/old-package # Python pip-autoremove --list # Requires: pip install pip-autoremove
Audit Commands
JavaScript/TypeScript/Node.js
npm
# Check what's outdated npm outdated # Update within semver range (safe) npm update # Update specific package to latest npm install package@latest # Check security vulnerabilities npm audit # Auto-fix vulnerabilities npm audit fix # View dependency tree npm list npm list --depth=0 # Top-level only # Why is this package installed? npm ls package-name # Check for duplicate packages npm dedupe
pnpm
# Check outdated pnpm outdated # Update all dependencies pnpm update # Update specific package pnpm update package@latest # Security audit pnpm audit # Deduplicate pnpm dedupe # List all packages pnpm list
yarn
# Check outdated yarn outdated # Upgrade interactive (recommended) yarn upgrade-interactive # Update all yarn upgrade # Security audit yarn audit # Why is this here? yarn why package-name
Python
pip
# List outdated pip list --outdated # Update specific package pip install --upgrade package-name # Security audit pip-audit # Install: pip install pip-audit # Freeze current dependencies pip freeze > requirements.txt # Check dependencies of a package pip show package-name
poetry
# Show outdated poetry show --outdated # Update all poetry update # Update specific package poetry update package-name # Security check poetry audit # poetry-audit-plugin required # Show dependency tree poetry show --tree
pipenv
# Check for security vulnerabilities pipenv check # Update all pipenv update # Update specific pipenv update package-name # Show dependency graph pipenv graph
Priority Matrix
| Priority | Type | Action | Timeline | Example |
|---|---|---|---|---|
| P0 | Critical CVE (actively exploited) | Patch immediately | Same day | Auth bypass, RCE |
| P1 | High CVE or major framework update | Plan migration | 1-2 weeks | Next.js, React major version |
| P2 | Deprecated with active usage | Find replacement | 2-4 weeks | moment.js → date-fns |
| P3 | Minor/patch updates | Batch update | Monthly | Non-breaking updates |
| P4 | Unused dependencies | Remove | Next cleanup PR | Dead imports |
Priority Decision Tree
Is there a CVE? ├─ Yes → Is it critical/high severity? │ ├─ Yes → P0 (patch immediately) │ └─ No → P1 (plan update) └─ No → Is package deprecated? ├─ Yes → Is it actively used? │ ├─ Yes → P2 (find replacement) │ └─ No → P4 (remove) └─ No → Is it outdated? ├─ Major version → P1 (plan migration) ├─ Minor/patch → P3 (batch update) └─ Unused → P4 (remove)
Common Replacements
Date/Time Libraries
JavaScript/TypeScript
// ❌ moment.js (deprecated, 288KB minified) import moment from 'moment'; const formatted = moment().format('YYYY-MM-DD'); const diff = moment(date1).diff(moment(date2), 'days'); // ✅ date-fns (tree-shakeable, 2-5KB per function) import { format, differenceInDays } from 'date-fns'; const formatted = format(new Date(), 'yyyy-MM-dd'); const diff = differenceInDays(date1, date2); // ✅ Native Intl (zero bundle cost) const formatted = new Intl.DateTimeFormat('en-US').format(new Date()); const relative = new Intl.RelativeTimeFormat('en').format(-1, 'day'); // "1 day ago"
Python
# ❌ arrow (overhead for simple tasks) import arrow now = arrow.now().format('YYYY-MM-DD') # ✅ Native datetime from datetime import datetime now = datetime.now().strftime('%Y-%m-%d') # ✅ pendulum (for complex timezone handling) import pendulum now = pendulum.now('America/New_York')
Utility Libraries
JavaScript/TypeScript
// ❌ Full lodash import (70KB) import _ from 'lodash'; const value = _.get(obj, 'path.to.value'); const unique = _.uniq(array); // ✅ Specific imports (5-10KB) import get from 'lodash/get'; import uniq from 'lodash/uniq'; // ✅ Native alternatives (0KB) const value = obj?.path?.to?.value; // Optional chaining const unique = [...new Set(array)]; // Set const keys = Object.keys(obj); // Object.keys const flat = array.flat(); // Array.flat() const grouped = Object.groupBy(arr, fn); // Object.groupBy
HTTP Clients
JavaScript/TypeScript
// ❌ axios (11KB) - often unnecessary import axios from 'axios'; const { data } = await axios.get('/api/users'); // ✅ Native fetch (0KB) - built-in const response = await fetch('/api/users'); const data = await response.json(); // ✅ ky (2KB) - if you need retries/timeout import ky from 'ky'; const data = await ky.get('/api/users').json();
Python
# ❌ requests (large for serverless) import requests response = requests.get('https://api.example.com') # ✅ httpx (async support, same API) import httpx async with httpx.AsyncClient() as client: response = await client.get('https://api.example.com') # ✅ urllib (native, for simple cases) from urllib.request import urlopen response = urlopen('https://api.example.com')
Testing Libraries
JavaScript/TypeScript
// Consider consolidating test runners // If using Jest + Vitest + Playwright separately: // ✅ Vitest can replace Jest in most projects (faster, native ESM) // ✅ Keep Playwright for E2E, use Vitest for unit/integration
Validation Libraries
JavaScript/TypeScript
// ❌ Multiple validation libraries import * as yup from 'yup'; import Joi from 'joi'; import { z } from 'zod'; // ✅ Pick one (Zod recommended for TypeScript) import { z } from 'zod'; const schema = z.object({ email: z.string().email(), age: z.number().min(0) });
Update Strategy
Batch Related Updates
# Update all ESLint-related packages together pnpm update eslint @typescript-eslint/parser @typescript-eslint/eslint-plugin # Update all testing packages together pnpm update vitest @vitest/ui @vitest/coverage-v8 # Update all Next.js packages together pnpm update next react react-dom @types/react @types/react-dom
Test After Updates
Comprehensive Testing Checklist
# 1. Type check pnpm tsc --noEmit # 2. Lint pnpm lint # 3. Unit tests pnpm test # 4. Build verification pnpm build # 5. Dev server (smoke test) pnpm dev # Open browser, test key features # 6. E2E tests (if available) pnpm test:e2e
Incremental Update Strategy
For Major Version Updates
# 1. Create branch git checkout -b chore/update-nextjs-15 # 2. Update package.json # Change "next": "^14.0.0" → "^15.0.0" # 3. Install pnpm install # 4. Read migration guide # Visit: nextjs.org/docs/upgrading # 5. Address breaking changes # Follow migration guide step-by-step # 6. Test thoroughly pnpm test && pnpm build # 7. Commit and PR git add . git commit -m "chore: upgrade Next.js to v15"
Cleanup Workflow
Step 1: Identify Unused Dependencies
npx depcheck
Example Output:
Unused dependencies * lodash * moment * old-library Unused devDependencies * @types/old-package * unused-test-lib
Step 2: Verify Not Used
# Search codebase for imports rg "from 'lodash'" --type ts rg "import.*lodash" --type ts rg "require\('lodash'\)" --type js # If no results → safe to remove
Step 3: Remove Package
pnpm remove lodash
Step 4: Update Lock File
# npm rm package-lock.json npm install # pnpm rm pnpm-lock.yaml pnpm install # yarn rm yarn.lock yarn install
Step 5: Test
pnpm test pnpm build
Cleanup PR Template
## Dependency Cleanup ### Security Updates (P0/P1) - [ ] `next`: 14.0.4 → 14.2.3 (CVE-2024-XXXX) - [ ] `jose`: 4.15.4 → 4.15.5 (CVE-2024-YYYY) ### Removed (Unused) - [ ] `lodash` - replaced with native JS methods - [ ] `moment` - replaced with date-fns - [ ] `@types/old-package` - package no longer used ### Updated (Maintenance) - [ ] `eslint`: 8.57.0 → 9.0.0 - [ ] `typescript`: 5.3.3 → 5.4.2 ### Migration Notes **lodash → Native**: - `_.get()` → optional chaining `obj?.prop?.value` - `_.uniq()` → `[...new Set(array)]` **moment → date-fns**: - `moment().format('YYYY-MM-DD')` → `format(new Date(), 'yyyy-MM-dd')` ### Testing - [ ] All tests pass (`pnpm test`) - [ ] Build succeeds (`pnpm build`) - [ ] No runtime errors in dev (`pnpm dev`) - [ ] E2E tests pass (if applicable) ### Bundle Size Impact - Before: 2.4 MB - After: 1.8 MB - **Savings: 600 KB (25% reduction)**
Security Scanning
Automated Security Checks
GitHub Actions
# .github/workflows/security.yml name: Security Audit on: schedule: - cron: '0 0 * * 1' # Weekly on Monday pull_request: push: branches: [main] jobs: audit: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - name: Setup Node.js uses: actions/setup-node@v4 with: node-version: '20' - name: Install dependencies run: npm ci - name: Run security audit run: npm audit --audit-level=high - name: Check for outdated packages run: npm outdated || true - name: Dependency review uses: actions/dependency-review-action@v4 if: github.event_name == 'pull_request'
Snyk Integration
# .github/workflows/snyk.yml name: Snyk Security on: [push, pull_request] jobs: security: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - name: Run Snyk to check for vulnerabilities uses: snyk/actions/node@master env: SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
Manual Security Commands
# npm security audit npm audit # Show only high/critical npm audit --audit-level=high # Get JSON report npm audit --json > audit-report.json # Snyk (requires: npm install -g snyk) snyk test # Test for vulnerabilities snyk monitor # Continuous monitoring snyk wizard # Interactive fixing # Socket.dev (supply chain security) npx socket-npm audit
CVE Response Process
-
Notification: Receive security advisory (GitHub, npm, Snyk)
-
Assess Impact:
# Find where vulnerable package is used npm ls vulnerable-package # Check if we use vulnerable functionality rg "vulnerableFunction" --type ts -
Patch:
# Update to patched version npm install vulnerable-package@4.15.5 # Or update dependency that depends on it npm update parent-package -
Verify Fix:
npm audit # Should show 0 vulnerabilities -
Test & Deploy:
pnpm test && pnpm build git commit -m "fix: patch CVE-2024-XXXX in vulnerable-package"
Summary
Monthly Maintenance Checklist
## Dependency Maintenance - [YYYY-MM] ### Security - [ ] Run `npm audit` and address high/critical issues - [ ] Review GitHub security advisories - [ ] Check Snyk dashboard (if integrated) ### Updates - [ ] Check `npm outdated` for major updates - [ ] Update patch versions: `npm update` - [ ] Plan migration for deprecated packages ### Cleanup - [ ] Run `npx depcheck` to find unused deps - [ ] Remove packages with zero imports - [ ] Deduplicate: `npm dedupe` ### Testing - [ ] Run full test suite - [ ] Check build succeeds - [ ] Verify dev server works - [ ] Test in production-like environment ### Documentation - [ ] Update CHANGELOG.md - [ ] Document breaking changes - [ ] Update .env.example if needed
Best Practices
- Automate: Set up GitHub Actions for weekly audits
- Batch Updates: Group related dependency updates
- Test Thoroughly: Never skip tests after updates
- Document: Keep CHANGELOG.md updated
- Measure Impact: Track bundle size changes
- Stay Informed: Subscribe to security advisories
- Use Lock Files: Commit package-lock.json/pnpm-lock.yaml
- Gradual Migration: Don't update everything at once