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LLMs-Universal-Life-Science-and-Clinical-Skills- gh-address-comments

<!--

install
source · Clone the upstream repo
git clone https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- "$T" && mkdir -p ~/.claude/skills && cp -r "$T/Skills/External_Collections/Babu_OpenAI_skills-main (2)/skills/.curated/gh-address-comments" ~/.claude/skills/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-gh-address-comment && rm -rf "$T"
manifest: Skills/External_Collections/Babu_OpenAI_skills-main (2)/skills/.curated/gh-address-comments/SKILL.md
source content
<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA -->

---name: gh-address-comments description: Help address review/issue comments on the open GitHub PR for the current branch using gh CLI; verify gh auth first and prompt the user to authenticate if not logged in. metadata: short-description: Address comments in a GitHub PR review

keywords:

  • gh-address-comments
  • automation
  • biomedical measurable_outcome: execute task with >95% success rate. allowed-tools:
  • read_file
  • run_shell_command ---"

PR Comment Handler

Guide to find the open PR for the current branch and address its comments with gh CLI. Run all 

gh
commands with elevated network access.

Prereq: ensure 

gh
is authenticated (for example, run 
gh auth login
once), then run 
gh auth status
with escalated permissions (include workflow/repo scopes) so 
gh
commands succeed. If sandboxing blocks 
gh auth status
, rerun it with 
sandbox_permissions=require_escalated
.

1) Inspect comments needing attention

  • Run scripts/fetch_comments.py which will print out all the comments and review threads on the PR

2) Ask the user for clarification

  • Number all the review threads and comments and provide a short summary of what would be required to apply a fix for it
  • Ask the user which numbered comments should be addressed

3) If user chooses comments

  • Apply fixes for the selected comments

Notes:

  • If gh hits auth/rate issues mid-run, prompt the user to re-authenticate with 
    gh auth login
    , then retry.
<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->