install
source · Clone the upstream repo
git clone https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- "$T" && mkdir -p ~/.claude/skills && cp -r "$T/Skills/External_Collections/OpenAI_Curated_2026/pdf" ~/.claude/skills/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-pdf-e952ab && rm -rf "$T"
manifest:
Skills/External_Collections/OpenAI_Curated_2026/pdf/SKILL.mdsource content
<!--
# COPYRIGHT NOTICE
# This file is part of the "Universal Biomedical Skills" project.
# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
# All Rights Reserved.
#
# This code is proprietary and confidential.
# Unauthorized copying of this file, via any medium is strictly prohibited.
#
# Provenance: Authenticated by MD BABU MIA
-->
name: "pdf" description: "Use when tasks involve reading, creating, or reviewing PDF files where rendering and layout matter; prefer visual checks by rendering pages (Poppler) and use Python tools such as
reportlab, pdfplumber, and pypdf for generation and extraction."
measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes.
allowed-tools:
- read_file
- run_shell_command
PDF Skill
When to use
- Read or review PDF content where layout and visuals matter.
- Create PDFs programmatically with reliable formatting.
- Validate final rendering before delivery.
Workflow
- Prefer visual review: render PDF pages to PNGs and inspect them.
- Use
if available.pdftoppm - If unavailable, install Poppler or ask the user to review the output locally.
- Use
- Use
to generate PDFs when creating new documents.reportlab - Use
(orpdfplumber
) for text extraction and quick checks; do not rely on it for layout fidelity.pypdf - After each meaningful update, re-render pages and verify alignment, spacing, and legibility.
Temp and output conventions
- Use
for intermediate files; delete when done.tmp/pdfs/ - Write final artifacts under
when working in this repo.output/pdf/ - Keep filenames stable and descriptive.
Dependencies (install if missing)
Prefer
uv for dependency management.
Python packages:
uv pip install reportlab pdfplumber pypdf
If
uv is unavailable:
python3 -m pip install reportlab pdfplumber pypdf
System tools (for rendering):
# macOS (Homebrew) brew install poppler # Ubuntu/Debian sudo apt-get install -y poppler-utils
If installation isn't possible in this environment, tell the user which dependency is missing and how to install it locally.
Environment
No required environment variables.
Rendering command
pdftoppm -png $INPUT_PDF $OUTPUT_PREFIX
Quality expectations
- Maintain polished visual design: consistent typography, spacing, margins, and section hierarchy.
- Avoid rendering issues: clipped text, overlapping elements, broken tables, black squares, or unreadable glyphs.
- Charts, tables, and images must be sharp, aligned, and clearly labeled.
- Use ASCII hyphens only. Avoid U+2011 (non-breaking hyphen) and other Unicode dashes.
- Citations and references must be human-readable; never leave tool tokens or placeholder strings.
Final checks
- Do not deliver until the latest PNG inspection shows zero visual or formatting defects.
- Confirm headers/footers, page numbering, and section transitions look polished.
- Keep intermediate files organized or remove them after final approval.