Project Init Workflow

Use this workflow when starting a new research project that requires both a LaTeX paper repo and a Python code repo, managed in parallel under a shared project folder.

Expected Output Structure

~/Projects/<ProjectName>/
├── paper/    ← LaTeX repo (init-latex-project)
├── code/     ← Python ML repo (init-python-project)
└── PROJECT.md ← Project overview linking both repos

---

Step 1 — Gather Project Information

Ask the user the following in a single message:

1. Project name: What is the project called? (used as the parent folder name, e.g.

   DemoProject

   )
2. Parent directory: Where should this project live? (default:

   ~/Projects/

   )
3. Paper venue: Which conference/journal? (

   iclr

   ,

   cvpr

   ,

   icml

   ,

   acm

   ,

   acl

   , or

   none

   for generic arXiv)
4. Research summary (brief): What is the method? What datasets/benchmarks? What metrics?
   • This will be used to pre-fill the

     paper/

     structure and

     PROJECT.md

5. GitHub: Do you have GitHub repos ready for paper and code? If yes, provide SSH URLs (or skip to add later).

Wait for the user's answers before proceeding.

---

Step 2 — Create the Parent Folder

mkdir -p <parent-dir>/<ProjectName>

---

Step 3 — Initialize the Paper Repo

Run the

init-latex-project

skill:

bash ~/.claude/skills/init-latex-project/scripts/init.sh <ProjectName>-paper <parent-dir>/<ProjectName>/paper [--venue <venue>] --git

Note: Expand

~

to the actual home directory (e.g.

/Users/jieke

). Use

--venue

only if a venue was specified; omit for generic arXiv.

After the script runs:

1. Add a

   sections/daily_experiments.tex

   file to the paper:

% Daily Experiments Log
% Add experiment entries in reverse chronological order (newest first).
%
% Template for each entry:
%   \subsection*{YYYY-MM-DD — <short title>}
%   \textbf{Setup:} <method variant, dataset, config>\\
%   \textbf{Result:} <key numbers, metric values>\\
%   \textbf{Observation:} <what worked, what didn't>\\
%   \textbf{Next:} <follow-up experiment planned>

2. Add

   \input{sections/daily_experiments}

   to

   paper/main.tex

   in the appendix area (before

   \end{document}

   ), with a section header:

\section*{Daily Experiments (Internal)}
\input{sections/daily_experiments}

3. If GitHub SSH URL was provided for paper:

git -C <parent-dir>/<ProjectName>/paper remote add origin <paper-github-url>
git -C <parent-dir>/<ProjectName>/paper push -u origin main

---

Step 4 — Initialize the Code Repo

Invoke the

init-python-project

skill. Tell the user:

"Now let's set up the code repo. I'll run the

init-python-project

skill for the

code/

directory."

Use the

init-python-project

skill with the following context already established:

• Target directory:

  <parent-dir>/<ProjectName>/code/

• Project type:

  new

  , ML project
• GitHub URL: from Step 1 (if provided)

Follow all steps in

init-python-project

as normal. The code repo will be initialized at

<parent-dir>/<ProjectName>/code/

.

---

Step 5 — Create PROJECT.md in the Parent Folder

Write

<parent-dir>/<ProjectName>/PROJECT.md

with the following content (fill in from the user's research summary in Step 1):

# <ProjectName>

> <One-line description of the research project>

## Research Overview

**Method**: <method description>
**Datasets**: <datasets used>
**Benchmarks**: <benchmarks / baselines compared against>
**Metrics**: <evaluation metrics>

## Repository Structure

| Repo | Path | Purpose |
|------|------|---------|
| paper | `./paper/` | LaTeX paper (<venue or arXiv>) |
| code  | `./code/`  | Python implementation (uv)     |

## GitHub Remotes

| Repo | URL |
|------|-----|
| paper | <paper-github-url or TBD> |
| code  | <code-github-url or TBD> |

## Workflow

- **Design changes** (method, datasets, metrics): update `paper/sections/method.tex` first, then implement in `code/`
- **Experiment results**: record in `code/experiments/`, then sync to `paper/sections/daily_experiments.tex`
- **Milestones**: use `add-git-tag` skill in each repo separately
- **Code docs**: use `update-docs` skill in `code/`

## Key Files

- `paper/sections/method.tex` — canonical method description
- `paper/sections/exp.tex` — main experiments section
- `paper/sections/daily_experiments.tex` — running experiment log
- `code/docs/outlines/project_plan.md` — implementation roadmap
- `code/experiments/` — raw experiment outputs and logs

---

Step 6 — Final Summary

Report to the user:

Project initialized: <ProjectName>

paper/  → <paper-github-url or "local only">
code/   → <code-github-url or "local only">

Key skills for this project:
  - project-sync   → sync experiment results from code to paper
  - add-git-tag    → mark milestones in either repo
  - update-docs    → refresh code documentation

Next steps:
  1. Fill in paper/sections/method.tex with your method details
  2. Fill in paper/sections/exp.tex with planned experiments
  3. Start implementing in code/src/
  4. When you have results, use the project-sync skill to log them in paper