析擴散動

定 SDE、推 Fokker-Planck、解首達時、析參敏，以模擬驗。

用

• 推連時擴散之概密演→用
• 算有界擴散之均首達時或全分→用
• 析漂、擴散係、界參影響→用
• 以隨擬驗閉式解→用
• 建漂擴散或生擴散之動覺→用

入

• 必：SDE 規（漂函、擴散係、域/界）
• 必：漂擴散函之參值或範
• 必：界條（吸、反、混）
• 可：暫態析時域（默自察動）
• 可：數 PDE 解之空離（默 dx=0.001）
• 可：模擬軌數（默 10000）

行

一：定 SDE 模

定漂、擴散係、界條。

1. SDE 標 Ito 式：

dX(t) = mu(X, t) dt + sigma(X, t) dW(t)

mu

漂、

sigma

擴散係、

W(t)

標 Wiener。

2. 碼：

import numpy as np

class DiffusionProcess:
    """A one-dimensional diffusion process specified by drift and diffusion functions."""

    def __init__(self, drift_fn, diffusion_fn, lower_bound=None, upper_bound=None,
                 boundary_type="absorbing"):
        self.drift = drift_fn
        self.diffusion = diffusion_fn
        self.lower_bound = lower_bound
        self.upper_bound = upper_bound
        self.boundary_type = boundary_type

# Example: Ornstein-Uhlenbeck process on [0, a]
ou_process = DiffusionProcess(
    drift_fn=lambda x, t: 2.0 * (0.5 - x),     # mean-reverting drift
    diffusion_fn=lambda x, t: 0.1,               # constant diffusion
    lower_bound=0.0,
    upper_bound=1.0,
    boundary_type="absorbing"
)

# Example: Standard DDM (constant drift and diffusion)
ddm_process = DiffusionProcess(
    drift_fn=lambda x, t: 0.5,        # drift rate v
    diffusion_fn=lambda x, t: 1.0,    # unit diffusion (s=1, convention)
    lower_bound=0.0,                   # lower absorbing boundary
    upper_bound=1.5,                   # upper absorbing boundary (a)
    boundary_type="absorbing"
)

3. 定初態：

# Point source at x0
x0 = 0.75  # starting point (e.g., midpoint between boundaries for DDM with z=a/2)

# Or a distribution
initial_distribution = lambda x: np.exp(-50 * (x - 0.75)**2)  # narrow Gaussian

4. 驗參一致：

def validate_process(process, x0):
    """Check that the SDE specification is self-consistent."""
    assert process.lower_bound < process.upper_bound, "Lower bound must be less than upper bound"
    assert process.lower_bound <= x0 <= process.upper_bound, \
        f"Initial position {x0} outside bounds [{process.lower_bound}, {process.upper_bound}]"
    test_drift = process.drift(x0, 0)
    test_diff = process.diffusion(x0, 0)
    assert np.isfinite(test_drift), f"Drift is not finite at x0={x0}"
    assert test_diff > 0, f"Diffusion coefficient must be positive, got {test_diff}"
    print(f"Process validated: drift={test_drift:.4f}, diffusion={test_diff:.4f} at x0={x0}")

validate_process(ddm_process, x0=0.75)

得：全規 SDE，漂有限、擴散正、初於域內。

敗：擴散域中零或負→過退，察函形。漂於界無窮→考反界宜否。

二：推 Fokker-Planck

SDE 轉概密之偏微分方。

1. FPE 為 p(x, t)：

dp/dt = -d/dx [mu(x,t) * p(x,t)] + (1/2) * d^2/dx^2 [sigma(x,t)^2 * p(x,t)]

2. 常係（標 DDM）簡為：

dp/dt = -v * dp/dx + (s^2 / 2) * d^2p/dx^2

3. 數解 FPE 以有限差：

from scipy.sparse import diags
from scipy.sparse.linalg import spsolve

def solve_fokker_planck(process, x0, t_max, dx=0.001, dt=None):
    """Solve the FPE numerically using Crank-Nicolson scheme."""
    x_grid = np.arange(process.lower_bound, process.upper_bound + dx, dx)
    N = len(x_grid)

    if dt is None:
        max_sigma = max(process.diffusion(x, 0) for x in x_grid)
        dt = 0.4 * dx**2 / max_sigma**2  # CFL-like stability condition

    # Initial condition: narrow Gaussian centered at x0
    p = np.exp(-((x_grid - x0)**2) / (2 * (2*dx)**2))
    p[0] = 0  # absorbing boundary
    p[-1] = 0  # absorbing boundary
    p = p / (np.sum(p) * dx)

    t_steps = int(t_max / dt)
    survival = np.zeros(t_steps)
    density_snapshots = []

    for step in range(t_steps):
        mu_vals = np.array([process.drift(x, step*dt) for x in x_grid])
        sigma_vals = np.array([process.diffusion(x, step*dt) for x in x_grid])
        D = 0.5 * sigma_vals**2

        # Finite difference operators (interior points)
        advection = -mu_vals[1:-1] / (2 * dx)
        diffusion_coeff = D[1:-1] / dx**2

        main_diag = 1 + dt * 2 * diffusion_coeff
        upper_diag = dt * (-diffusion_coeff[:-1] - advection[:-1])
        lower_diag = dt * (-diffusion_coeff[1:] + advection[1:])

        A = diags([lower_diag, main_diag, upper_diag], [-1, 0, 1], format="csc")
        p[1:-1] = spsolve(A, p[1:-1])
        p[0] = 0
        p[-1] = 0

        survival[step] = np.sum(p[1:-1]) * dx

        if step % (t_steps // 10) == 0:
            density_snapshots.append((step * dt, p.copy()))

    return x_grid, survival, density_snapshots

4. 行而繪密演：

import matplotlib.pyplot as plt

x_grid, survival, snapshots = solve_fokker_planck(ddm_process, x0=0.75, t_max=5.0)

fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(14, 5))
for t_val, density in snapshots:
    ax1.plot(x_grid, density, label=f"t={t_val:.2f}")
ax1.set_xlabel("x")
ax1.set_ylabel("p(x, t)")
ax1.set_title("Fokker-Planck Density Evolution")
ax1.legend()

t_vals = np.linspace(0, 5.0, len(survival))
ax2.plot(t_vals, survival)
ax2.set_xlabel("Time")
ax2.set_ylabel("Survival probability")
ax2.set_title("Survival Probability S(t)")
fig.tight_layout()
fig.savefig("fokker_planck_solution.png", dpi=150)

得：密始為窄峰於 x0，按 SDE 散漂、漸減於界吸。存概單調由 1 至 0 減。

敗：密生振或負→時步太大，減 dt。密不減（存近 1）→界或太遠或漂離兩界。察解中界條。

三：算首達時分

推首達界之時分。

1. 由存函算 FPT 密：

def first_passage_time_density(survival, dt):
    """FPT density is the negative derivative of survival probability."""
    fpt_density = -np.gradient(survival, dt)
    fpt_density = np.maximum(fpt_density, 0)  # enforce non-negativity
    return fpt_density

2. 標 DDM 常漂用知析解：

def ddm_fpt_upper(t, v, a, z, s=1.0, n_terms=50):
    """Analytic FPT density at the upper boundary for constant-drift DDM.

    Uses the infinite series representation (large-time expansion).
    """
    if t <= 0:
        return 0.0
    density = 0.0
    for k in range(1, n_terms + 1):
        density += (k * np.pi * s**2 / a**2) * \
            np.exp(-v * (a - z) / s**2 - 0.5 * v**2 * t / s**2) * \
            np.sin(k * np.pi * z / a) * \
            np.exp(-0.5 * (k * np.pi * s / a)**2 * t)
    return density

3. 算 FPT 分要計：

def fpt_statistics(fpt_density, dt):
    """Compute mean, variance, and quantiles of the FPT distribution."""
    t_vals = np.arange(len(fpt_density)) * dt
    total_mass = np.sum(fpt_density) * dt

    # Normalize
    fpt_normed = fpt_density / total_mass if total_mass > 0 else fpt_density

    mean_fpt = np.sum(t_vals * fpt_normed) * dt
    var_fpt = np.sum((t_vals - mean_fpt)**2 * fpt_normed) * dt

    # Quantiles via CDF
    cdf = np.cumsum(fpt_normed) * dt
    quantile_10 = t_vals[np.searchsorted(cdf, 0.1)]
    quantile_50 = t_vals[np.searchsorted(cdf, 0.5)]
    quantile_90 = t_vals[np.searchsorted(cdf, 0.9)]

    return {
        "mean": mean_fpt,
        "std": np.sqrt(var_fpt),
        "q10": quantile_10,
        "q50": quantile_50,
        "q90": quantile_90,
        "total_probability": total_mass
    }

4. 雙界題以各界吸壁之概通分 FPT（界格點密之有限差）。

得：FPT 密為右偏單峰。DDM 正漂上界 FPT 質多模短於下界。典 DDM 參（v=1、a=1.5、z=0.75）均 FPT 約 0.5-2.0 秒。

敗：FPT 密有負→數微噪，施小高斯平。兩界全概不近 1.0→時域太短（增 t_max）或解中概漏。

四：析參敏

量參變影 FPT 分。

1. 定參格：

param_ranges = {
    "v": np.linspace(0.2, 3.0, 15),     # drift rate
    "a": np.linspace(0.5, 2.5, 15),      # boundary separation
    "z_ratio": np.linspace(0.3, 0.7, 9)  # starting point as fraction of a
}

base_params = {"v": 1.0, "a": 1.5, "z_ratio": 0.5}

2. 各參掃，他持基：

sensitivity_results = {}

for param_name, param_values in param_ranges.items():
    means = []
    accuracies = []
    for val in param_values:
        params = base_params.copy()
        params[param_name] = val
        z = params["z_ratio"] * params["a"]

        process = DiffusionProcess(
            drift_fn=lambda x, t, v=params["v"]: v,
            diffusion_fn=lambda x, t: 1.0,
            lower_bound=0.0,
            upper_bound=params["a"],
            boundary_type="absorbing"
        )

        _, survival, _ = solve_fokker_planck(process, x0=z, t_max=10.0)
        fpt = first_passage_time_density(survival, dt=10.0/len(survival))
        stats = fpt_statistics(fpt, dt=10.0/len(survival))
        means.append(stats["mean"])
        accuracies.append(stats["total_probability"])  # proxy for upper boundary

    sensitivity_results[param_name] = {
        "values": param_values,
        "mean_fpt": np.array(means),
        "accuracy": np.array(accuracies)
    }

3. 繪敏曲：

fig, axes = plt.subplots(1, 3, figsize=(18, 5))
for idx, (param_name, result) in enumerate(sensitivity_results.items()):
    ax = axes[idx]
    ax.plot(result["values"], result["mean_fpt"], "b-o", label="Mean FPT")
    ax.set_xlabel(param_name)
    ax.set_ylabel("Mean FPT")
    ax.set_title(f"Sensitivity to {param_name}")

    ax2 = ax.twinx()
    ax2.plot(result["values"], result["accuracy"], "r--s", label="P(upper)")
    ax2.set_ylabel("P(upper boundary)")
    ax.legend(loc="upper left")
    ax2.legend(loc="upper right")

fig.tight_layout()
fig.savefig("parameter_sensitivity.png", dpi=150)

4. 算偏微（基處局敏）：

for param_name, result in sensitivity_results.items():
    idx_base = np.argmin(np.abs(result["values"] - base_params[param_name]))
    if idx_base > 0 and idx_base < len(result["values"]) - 1:
        d_mean = (result["mean_fpt"][idx_base+1] - result["mean_fpt"][idx_base-1]) / \
                 (result["values"][idx_base+1] - result["values"][idx_base-1])
        print(f"d(mean_FPT)/d({param_name}) at baseline: {d_mean:.4f}")

得：v 對均 FPT 強負、對精強正。a 對均 FPT 強正（速精權衡）。z 移精影均 FPT 較小。

敗：敏曲平或非單調→察參範足且解時域捕全 FPT 分。漂率對均 FPT 非單調示解蟲。

五：以模擬驗析

行 SDE 蒙地卡羅以驗析與數 PDE。

1. Euler-Maruyama 模擬 SDE：

def simulate_sde(process, x0, dt_sim=0.0001, t_max=10.0, n_trajectories=10000):
    """Simulate SDE paths and record first-passage times."""
    n_steps = int(t_max / dt_sim)
    fpt_upper = np.full(n_trajectories, np.nan)
    fpt_lower = np.full(n_trajectories, np.nan)

    x = np.full(n_trajectories, x0)
    sqrt_dt = np.sqrt(dt_sim)

    for step in range(n_steps):
        t = step * dt_sim
        active = np.isnan(fpt_upper) & np.isnan(fpt_lower)
        if not active.any():
            break

        mu = np.array([process.drift(xi, t) for xi in x[active]])
        sigma = np.array([process.diffusion(xi, t) for xi in x[active]])
        dW = np.random.randn(active.sum()) * sqrt_dt

        x[active] += mu * dt_sim + sigma * dW

        # Check boundary crossings
        hit_upper = active & (x >= process.upper_bound)
        hit_lower = active & (x <= process.lower_bound)
        fpt_upper[hit_upper] = (step + 1) * dt_sim
        fpt_lower[hit_lower] = (step + 1) * dt_sim

    return fpt_upper, fpt_lower

2. 行模擬而算經驗 FPT 分：

fpt_upper_sim, fpt_lower_sim = simulate_sde(ddm_process, x0=0.75, n_trajectories=50000)

# Empirical statistics
valid_upper = fpt_upper_sim[~np.isnan(fpt_upper_sim)]
valid_lower = fpt_lower_sim[~np.isnan(fpt_lower_sim)]
total_absorbed = len(valid_upper) + len(valid_lower)
accuracy_sim = len(valid_upper) / total_absorbed

print(f"Simulated accuracy: {accuracy_sim:.4f}")
print(f"Mean FPT (upper): {valid_upper.mean():.4f} +/- {valid_upper.std()/np.sqrt(len(valid_upper)):.4f}")
print(f"Mean FPT (lower): {valid_lower.mean():.4f} +/- {valid_lower.std()/np.sqrt(len(valid_lower)):.4f}")

3. 比模擬於析或數 PDE：

fig, ax = plt.subplots(figsize=(10, 6))

# Empirical histogram
ax.hist(valid_upper, bins=100, density=True, alpha=0.5, label="Simulation (upper)")
ax.hist(valid_lower, bins=100, density=True, alpha=0.5, label="Simulation (lower)")

# Analytical solution overlay
t_vals_analytic = np.linspace(0.01, 5.0, 500)
v, a, z = 0.5, 1.5, 0.75
fpt_analytic = [ddm_fpt_upper(t, v, a, z) for t in t_vals_analytic]
ax.plot(t_vals_analytic, fpt_analytic, "k-", linewidth=2, label="Analytic (upper)")

ax.set_xlabel("First-passage time")
ax.set_ylabel("Density")
ax.set_title("FPT Distribution: Simulation vs. Analytic")
ax.legend()
fig.savefig("fpt_validation.png", dpi=150)

4. 量法間合：

from scipy.stats import ks_2samp

# Kolmogorov-Smirnov test between simulated and analytically-derived samples
analytic_cdf = np.cumsum(fpt_analytic) * (t_vals_analytic[1] - t_vals_analytic[0])
sim_sorted = np.sort(valid_upper)
sim_cdf = np.arange(1, len(sim_sorted)+1) / len(sim_sorted)

# Interpolate analytic CDF at simulation quantiles
from scipy.interpolate import interp1d
analytic_interp = interp1d(t_vals_analytic, analytic_cdf, bounds_error=False, fill_value=(0, 1))
max_diff = np.max(np.abs(sim_cdf - analytic_interp(sim_sorted)))
print(f"Max CDF difference (simulation vs. analytic): {max_diff:.4f}")
assert max_diff < 0.05, f"Simulation and analytic FPT differ by {max_diff:.4f} (threshold: 0.05)"

得：模擬直方密合析 FPT 曲。50000 軌 KS 測最大 CDF 差 <0.05。模擬均 FPT 於析值 2 標誤內。

敗：模擬異於析→先察 Euler-Maruyama 步——dt_sim 須小至界越不漏（試 dt_sim=0.00001）。析級不收→增 n_terms。非常係無析解時，比兩數法（PDE 解對模擬）相互。

驗

• SDE 規通一致察（漂有限、擴散正、x0 於域）
• Fokker-Planck 密積為時單調減（存函）
• Fokker-Planck 解無數偽（振、負）
• FPT 密非負且兩界積近 1.0
• 敏析示預期單調關（v 對精、a 對均 FPT）
• 蒙地卡羅均 FPT 於 PDE/析解之 2 標誤內
• KS 測模擬於析最大 CDF 差 <0.05

忌

• Euler-Maruyama 步太大：大 dt_sim 致軌過界，致 FPT 估偏。dt_sim 至多預期均 FPT 之 1/10，或用界正解
• FPT 級截太早：析 DDM FPT 密用無窮級。太少（<20）致見偽，尤短時。用至少 50 項驗收
• 忽 PDE 中數擴散：一階有限差致人為擴散展 FPT 分。為精用 Crank-Nicolson 或更高階
• 混 Ito 與 Stratonovich：Fokker-Planck 隨 SDE 例異。上標式設 Ito 微積。Stratonovich 須加噪致漂正
• 不計兩界：雙界題全吸概須和為 1.0。唯報上界 FPT 而忽下界致誤計

參

• fit-drift-diffusion-model

  — 施此動於行為數估參

• implement-diffusion-network

  — 生擴散模離同 SDE 框

• write-testthat-tests

  — 測數解與析施

• create-technical-report

  — 文擴散析果