Agent-almanac create-r-package

install
source · Clone the upstream repo
git clone https://github.com/pjt222/agent-almanac
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/pjt222/agent-almanac "$T" && mkdir -p ~/.claude/skills && cp -r "$T/i18n/wenyan-lite/skills/create-r-package" ~/.claude/skills/pjt222-agent-almanac-create-r-package-7ece4c && rm -rf "$T"
manifest: i18n/wenyan-lite/skills/create-r-package/SKILL.md
source content

Create R Package

Scaffold a fully configured R package with modern tooling and best practices.

When to Use

  • Starting a new R package from scratch
  • Converting loose R scripts into a package
  • Setting up a package skeleton for collaborative development

Inputs

  • Required: Package name (lowercase, no special characters except
    .
    )
  • Required: One-line description of the package purpose
  • Optional: License type (default: MIT)
  • Optional: Author information (name, email, ORCID)
  • Optional: Whether to initialize renv (default: yes)

Procedure

Step 1: Create Package Skeleton

usethis::create_package("packagename")
setwd("packagename")

Expected: Directory created with

DESCRIPTION
,
NAMESPACE
,
R/
, and
man/
subdirectories.

On failure: Ensure usethis is installed (

install.packages("usethis")
). Check that the directory does not already exist.

Step 2: Configure DESCRIPTION

Edit

DESCRIPTION
with accurate metadata:

Package: packagename
Title: What the Package Does (Title Case)
Version: 0.1.0
Authors@R:
    person("First", "Last", , "email@example.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0000-0000-0000"))
Description: One paragraph describing what the package does. Must be more
    than one sentence. Avoid starting with "This package".
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/username/packagename
BugReports: https://github.com/username/packagename/issues

Expected: Valid DESCRIPTION that passes

R CMD check
with no metadata warnings.

On failure: If

R CMD check
warns about DESCRIPTION fields, verify that
Title
is in Title Case,
Description
is more than one sentence, and
Authors@R
uses valid
person()
syntax.

Step 3: Set Up Infrastructure

usethis::use_mit_license()
usethis::use_readme_md()
usethis::use_news_md()
usethis::use_testthat(edition = 3)
usethis::use_git()
usethis::use_github_action("check-standard")

Expected: LICENSE, README.md, NEWS.md,

tests/
directory,
.git/
initialized, and
.github/workflows/
created.

On failure: If any

usethis::use_*()
function fails, install the missing dependency and rerun. If
.git/
already exists,
use_git()
will skip initialization.

Step 4: Create Development Configuration

Create

.Rprofile
:

if (file.exists("renv/activate.R")) {
  source("renv/activate.R")
}

if (requireNamespace("mcptools", quietly = TRUE)) {
  mcptools::mcp_session()
}

Create

.Renviron.example
:

RSTUDIO_PANDOC="C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools"
# GITHUB_PAT=your_github_token_here

Create

.Rbuildignore
entries:

^\.Rprofile$
^\.Renviron$
^\.Renviron\.example$
^renv$
^renv\.lock$
^CLAUDE\.md$
^\.github$
^.*\.Rproj$

Expected:

.Rprofile
,
.Renviron.example
, and
.Rbuildignore
are created. Development files are excluded from the built package.

On failure: If

.Rprofile
causes errors on startup, check for syntax issues. Ensure
requireNamespace()
guards prevent failures when optional packages are missing.

Step 5: Initialize renv

renv::init()

Expected:

renv/
directory and
renv.lock
created. Project-local library is active.

On failure: Install renv with

install.packages("renv")
. If renv hangs during initialization, check network connectivity or set
options(timeout = 600)
.

Step 6: Create Package Documentation File

Create

R/packagename-package.R
:

#' @keywords internal
"_PACKAGE"

## usethis namespace: start
## usethis namespace: end
NULL

Expected:

R/packagename-package.R
exists with the
"_PACKAGE"
sentinel. Running
devtools::document()
generates package-level help.

On failure: Ensure the filename matches the pattern

R/<packagename>-package.R
. The
"_PACKAGE"
string must be a standalone expression, not inside a function.

Step 7: Create CLAUDE.md

Create

CLAUDE.md
in the project root with project-specific instructions for AI assistants.

Expected:

CLAUDE.md
exists in the project root with project-specific editing conventions, build commands, and architecture notes.

On failure: If unsure what to include, start with the package name, a one-line description, common dev commands (

devtools::check()
,
devtools::test()
), and any non-obvious conventions.

Validation

  • devtools::check()
    returns 0 errors, 0 warnings
  • Package structure matches expected layout
  • .Rprofile
    loads without errors
  • renv::status()
    shows no issues
  • Git repository initialized with appropriate
    .gitignore
  • GitHub Actions workflow file present

Common Pitfalls

  • Package name conflicts: Check CRAN with
    available::available("packagename")
    before committing to a name
  • Missing .Rbuildignore entries: Development files (
    .Rprofile
    ,
    .Renviron
    ,
    renv/
    ) must be excluded from the built package
  • Forgetting Encoding: Always include
    Encoding: UTF-8
    in DESCRIPTION
  • RoxygenNote mismatch: The version in DESCRIPTION must match your installed roxygen2

Examples

# Minimal creation
usethis::create_package("myanalysis")

# Full setup in one session
usethis::create_package("myanalysis")
usethis::use_mit_license()
usethis::use_testthat(edition = 3)
usethis::use_readme_md()
usethis::use_git()
usethis::use_github_action("check-standard")
renv::init()

Related Skills

  • write-roxygen-docs
    - document the functions you create
  • write-testthat-tests
    - add tests for your package
  • setup-github-actions-ci
    - detailed CI/CD configuration
  • manage-renv-dependencies
    - manage package dependencies
  • write-claude-md
    - create effective AI assistant instructions