Agent-almanac create-r-package
install
source · Clone the upstream repo
git clone https://github.com/pjt222/agent-almanac
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/pjt222/agent-almanac "$T" && mkdir -p ~/.claude/skills && cp -r "$T/i18n/caveman-ultra/skills/create-r-package" ~/.claude/skills/pjt222-agent-almanac-create-r-package-82d189 && rm -rf "$T"
manifest:
i18n/caveman-ultra/skills/create-r-package/SKILL.mdsource content
Create R Package
Scaffold a fully configured R package with modern tooling and best practices.
When to Use
- Starting a new R package from scratch
- Converting loose R scripts into a package
- Setting up a package skeleton for collaborative development
Inputs
- Required: Package name (lowercase, no special characters except
). - Required: One-line description of the package purpose
- Optional: License type (default: MIT)
- Optional: Author information (name, email, ORCID)
- Optional: Whether to initialize renv (default: yes)
Procedure
Step 1: Create Package Skeleton
usethis::create_package("packagename") setwd("packagename")
Expected: Directory created with
DESCRIPTION, NAMESPACE, R/, and man/ subdirectories.
On failure: Ensure usethis is installed (
install.packages("usethis")). Check that the directory does not already exist.
Step 2: Configure DESCRIPTION
Edit
DESCRIPTION with accurate metadata:
Package: packagename Title: What the Package Does (Title Case) Version: 0.1.0 Authors@R: person("First", "Last", , "email@example.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0000-0000-0000")) Description: One paragraph describing what the package does. Must be more than one sentence. Avoid starting with "This package". License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.3.2 URL: https://github.com/username/packagename BugReports: https://github.com/username/packagename/issues
Expected: Valid DESCRIPTION that passes
R CMD check with no metadata warnings.
On failure: If
R CMD check warns about DESCRIPTION fields, verify that Title is in Title Case, Description is more than one sentence, and Authors@R uses valid person() syntax.
Step 3: Set Up Infrastructure
usethis::use_mit_license() usethis::use_readme_md() usethis::use_news_md() usethis::use_testthat(edition = 3) usethis::use_git() usethis::use_github_action("check-standard")
Expected: LICENSE, README.md, NEWS.md,
tests/ directory, .git/ initialized, and .github/workflows/ created.
On failure: If any
usethis::use_*() function fails, install the missing dependency and rerun. If .git/ already exists, use_git() will skip initialization.
Step 4: Create Development Configuration
Create
.Rprofile:
if (file.exists("renv/activate.R")) { source("renv/activate.R") } if (requireNamespace("mcptools", quietly = TRUE)) { mcptools::mcp_session() }
Create
.Renviron.example:
RSTUDIO_PANDOC="C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools" # GITHUB_PAT=your_github_token_here
Create
.Rbuildignore entries:
^\.Rprofile$ ^\.Renviron$ ^\.Renviron\.example$ ^renv$ ^renv\.lock$ ^CLAUDE\.md$ ^\.github$ ^.*\.Rproj$
Expected:
.Rprofile, .Renviron.example, and .Rbuildignore are created. Development files are excluded from the built package.
On failure: If
.Rprofile causes errors on startup, check for syntax issues. Ensure requireNamespace() guards prevent failures when optional packages are missing.
Step 5: Initialize renv
renv::init()
Expected:
renv/ directory and renv.lock created. Project-local library is active.
On failure: Install renv with
install.packages("renv"). If renv hangs during initialization, check network connectivity or set options(timeout = 600).
Step 6: Create Package Documentation File
Create
R/packagename-package.R:
#' @keywords internal "_PACKAGE" ## usethis namespace: start ## usethis namespace: end NULL
Expected:
R/packagename-package.R exists with the "_PACKAGE" sentinel. Running devtools::document() generates package-level help.
On failure: Ensure the filename matches the pattern
R/<packagename>-package.R. The "_PACKAGE" string must be a standalone expression, not inside a function.
Step 7: Create CLAUDE.md
Create
CLAUDE.md in the project root with project-specific instructions for AI assistants.
Expected:
CLAUDE.md exists in the project root with project-specific editing conventions, build commands, and architecture notes.
On failure: If unsure what to include, start with the package name, a one-line description, common dev commands (
devtools::check(), devtools::test()), and any non-obvious conventions.
Validation
-
returns 0 errors, 0 warningsdevtools::check() - Package structure matches expected layout
-
loads without errors.Rprofile -
shows no issuesrenv::status() - Git repository initialized with appropriate
.gitignore - GitHub Actions workflow file present
Common Pitfalls
- Package name conflicts: Check CRAN with
before committing to a nameavailable::available("packagename") - Missing .Rbuildignore entries: Development files (
,.Rprofile
,.Renviron
) must be excluded from the built packagerenv/ - Forgetting Encoding: Always include
in DESCRIPTIONEncoding: UTF-8 - RoxygenNote mismatch: The version in DESCRIPTION must match your installed roxygen2
Examples
# Minimal creation usethis::create_package("myanalysis") # Full setup in one session usethis::create_package("myanalysis") usethis::use_mit_license() usethis::use_testthat(edition = 3) usethis::use_readme_md() usethis::use_git() usethis::use_github_action("check-standard") renv::init()
Related Skills
- document the functions you createwrite-roxygen-docs
- add tests for your packagewrite-testthat-tests
- detailed CI/CD configurationsetup-github-actions-ci
- manage package dependenciesmanage-renv-dependencies
- create effective AI assistant instructionswrite-claude-md