Skills cran-extrachecks
git clone https://github.com/posit-dev/skills
T=$(mktemp -d) && git clone --depth=1 https://github.com/posit-dev/skills "$T" && mkdir -p ~/.claude/skills && cp -r "$T/r-lib/cran-extrachecks" ~/.claude/skills/posit-dev-skills-cran-extrachecks && rm -rf "$T"
r-lib/cran-extrachecks/SKILL.mdCRAN Extra Checks
Help R package developers prepare packages for CRAN submission by systematically checking for common ad-hoc requirements that CRAN reviewers enforce but
devtools::check() doesn't catch.
Workflow
- Initial Assessment: Ask user if this is first submission or resubmission
- Run Standard Checklist: Work through each item systematically (see below)
- Identify Issues: As you review files, note specific problems
- Propose Fixes: Suggest specific changes for each issue found
- Implement Changes: Make edits only when user approves
- Verify: Confirm all changes are complete
Standard CRAN Preparation Checklist
Work through these items systematically:
- Create NEWS.md: Run
if not already presentusethis::use_news_md() - Create cran-comments.md: Run
if not already presentusethis::use_cran_comments() - Review README:
- Ensure it includes install instructions that will be valid when the package is accepted to CRAN (usually
).install.packages("pkgname") - Check that it does not contain relative links. This works on GitHub but will be flagged by CRAN. Use full URLs to package documentation or remove the links.
- Does the README clearly explain the package purpose and functionality?
- Important: If README.Rmd exists, edit ONLY README.Rmd (README.md will be overwritten), then run
to re-render README.mddevtools::build_readme()
- Ensure it includes install instructions that will be valid when the package is accepted to CRAN (usually
- Proofread DESCRIPTION: Carefully review
andTitle:
fields (see detailed guidance below)Description: - Check function documentation: Verify all exported functions have
and@return
(see detailed guidance below)@examples - Verify copyright holder: Check that
includes a copyright holder with roleAuthors@R:[cph] - Review bundled file licensing: Check licensing of any included third-party files
- Run URL checks: Use
and fix any issuesurlchecker::url_check()
Detailed CRAN Checks
Documentation Requirements
Return Value Documentation (Strictly Enforced)
CRAN now strictly requires
@return documentation for all exported functions. Use the roxygen2 tag @return to document what the function returns.
- Required even for functions marked
@keywords internal - Required even if function returns nothing - document as
or similar@return None - Must be present for every exported function
Example:
# Missing @return - WILL BE REJECTED #' Calculate sum #' @export my_sum <- function(x, y) { x + y } # Correct - includes @return #' Calculate sum #' @param x First number #' @param y Second number #' @return A numeric value #' @export my_sum <- function(x, y) { x + y } # For functions with no return value #' Print message #' @param msg Message to print #' @return None, called for side effects #' @export print_msg <- function(msg) { cat(msg, "\n") }
Examples for Exported Functions
If your exported function has a meaningful return value, it will almost definitely require an
@examples section. Use the roxygen2 tag @examples.
- Required even for functions marked
@keywords internal - Exceptions exist for functions used purely for side effects (e.g., creating directories)
- Examples must be executable
Un-exported Functions with Examples
If you write roxygen examples for un-exported functions, you must either:
- Call them with
notation::::pkg:::my_fun() - Use
tag to suppress@noRd
file creation.Rd
Using
Sparingly\dontrun{}
\dontrun{} should only be used if the example really cannot be executed (e.g., missing additional software, API keys, etc.).
- If showing an error, wrap the call in
insteadtry() - Consider custom predicates (e.g.,
) withgooglesheets4::sheets_has_token()
blocksif () - Sometimes
can be used as the conditioninteractive() - Lengthy examples (> 5 sec) can use
\donttest{}
Never Comment Out Code in Examples
# BAD - Will be rejected #' @examples #' # my_function(x) # Don't do this!
CRAN's guidance: "Examples/code lines in examples should never be commented out. Ideally find toy examples that can be regularly executed and checked."
Guarding Examples with Suggested Packages
Use
@examplesIf for entire example sections requiring suggested packages:
#' @examplesIf rlang::is_installed("dplyr") #' library(dplyr) #' my_data %>% my_function()
For individual code blocks within examples:
#' @examples #' if (rlang::is_installed("dplyr")) { #' library(dplyr) #' my_data %>% my_function() #' }
DESCRIPTION Title Field
CRAN enforces strict Title requirements:
Use Title Case
Capitalize all words except articles like 'a', 'the'. Use
tools::toTitleCase() to help format.
Avoid Redundancy
Common phrases that get flagged:
- "A Toolkit for" → Remove
- "Tools for" → Remove
- "for R" → Remove
Examples:
# BAD Title: A Toolkit for the Construction of Modeling Packages for R # GOOD Title: Construct Modeling Packages # BAD Title: Command Argument Parsing for R # GOOD Title: Command Argument Parsing
Quote Software/Package Names
Put all software and R package names in single quotes:
# GOOD Title: Interface to 'Tiingo' Stock Price API
Length Limit
Keep titles under 65 characters.
DESCRIPTION Description Field
Never Start With Forbidden Phrases
CRAN will reject descriptions starting with:
- "This package"
- Package name
- "Functions for"
# BAD Description: This package provides functions for rendering slides. Description: Functions for rendering slides to different formats. # GOOD Description: Render slides to different formats including HTML and PDF.
Expand to 3-4 Sentences
Single-sentence descriptions are insufficient. Provide a broader description of:
- What the package does
- Why it may be useful
- Types of problems it helps solve
# BAD (too short) Description: Render slides to different formats. # GOOD Description: Render slides to different formats including HTML and PDF. Supports custom themes and progressive disclosure patterns. Integrates with 'reveal.js' for interactive presentations. Designed for technical presentations and teaching materials.
Quote Software Names, Not Functions
# BAD Description: Uses 'case_when()' to process data. # GOOD Description: Uses case_when() to process data with 'dplyr'.
Software, package, and API names get single quotes (including 'R'). Function names do not.
Expand All Acronyms
All acronyms must be fully expanded on first mention:
# BAD Description: Implements X-SAMPA processing. # GOOD Description: Implements Extended Speech Assessment Methods Phonetic Alphabet (X-SAMPA) processing.
Publication Titles Only in Double Quotes
Only use double quotes for publication titles, not for phrases or emphasis:
# BAD Description: Handles dates like "the first Monday of December". # GOOD Description: Handles dates like the first Monday of December.
URL and Link Validation
All URLs Must Use HTTPS
CRAN requires
https:// protocol for all URLs. HTTP links will be rejected.
# BAD URL: http://paleobiodb.org/ # GOOD URL: https://paleobiodb.org/
No Redirecting URLs
CRAN rejects URLs that redirect to other locations. Example rejection:
Found the following (possibly) invalid URLs: URL: https://h3geo.org/docs/core-library/coordsystems#faceijk-coordinates (moved to https://h3geo.org/docs/core-library/coordsystems/)
Use urlchecker Package
# Find redirecting URLs urlchecker::url_check() # Automatically update to final destinations urlchecker::url_update()
Ignore URLs That Will Exist After Publication
Some URLs that don't currently resolve will exist once the package is published on CRAN. These should NOT be changed:
- CRAN badge URLs (e.g.,
)https://cran.r-project.org/package=pkgname - CRAN status badges (e.g.,
)https://www.r-pkg.org/badges/version/pkgname - CRAN check results (e.g.,
)https://cranchecks.info/badges/pkgname - Package documentation URLs on r-universe or pkgdown sites that deploy after release
When
urlchecker::url_check() flags these URLs, leave them as-is. They are aspirational URLs that will work once the package is on CRAN.
Check for Invalid File URIs
Relative links in README must exist after package build. Common issue:
Found the following (possibly) invalid file URI: URI: CODE_OF_CONDUCT.md From: README.md
This occurs when files are in
.Rbuildignore. Solutions:
- Remove file from
.Rbuildignore - Use
which generates sections without relative linksusethis::use_code_of_conduct()
Administrative Requirements
Copyright Holder Role
Always add
[cph] role to Authors field, even if you're the only author:
# Required Authors@R: person("John", "Doe", role = c("aut", "cre", "cph"))
Posit-Supported Packages
For packages in Posit-related GitHub organizations (posit-dev, rstudio, r-lib, tidyverse, tidymodels) or maintained by someone with a @posit.co email address, include Posit Software, PBC as copyright holder and funder:
Authors@R: c( person("Jane", "Doe", role = c("aut", "cre"), email = "jane.doe@posit.co"), person("Posit Software, PBC", role = c("cph", "fnd"), comment = c(ROR = "03wc8by49")) )
LICENSE Year
Update LICENSE year to current submission year:
# If LICENSE shows 2024 but submitting in 2026 # Update: 2024 → 2026
Method References
CRAN may ask:
If there are references describing the methods in your package, please add these in the description field...
If there are no references, reply to the email explaining this. Consider adding a preemptive note in
cran-comments.md:
## Method References There are no published references describing the methods in this package. The package implements original functionality for [brief description].
Key Files to Review
Work through these files systematically:
- DESCRIPTION: Title, Description, Authors@R, URLs, License year
- R/*.R: Function documentation (
,@return
,@examples
,@examplesIf
)@noRd - README.Rmd (if exists): Edit this file (NOT README.md), then run
devtools::build_readme() - README.md: Review for install instructions, relative links, URLs. Only edit directly if no README.Rmd exists
- cran-comments.md: Preemptive notes for reviewers
- NEWS.md: Version notes for this release
- .Rbuildignore: Files referenced in README
Common Fix Patterns
DESCRIPTION Title:
# Before Title: A Toolkit for the Construction of Modeling Packages for R # After Title: Construct Modeling Packages
DESCRIPTION Description:
# Before Description: This package provides functions for rendering slides. # After Description: Render slides to different formats including HTML and PDF. Supports custom themes and progressive disclosure. Integrates with 'reveal.js' for interactive presentations.
Function Documentation:
# Before - Missing @return #' Calculate total #' @param x Values #' @export calc_total <- function(x) sum(x) # After - Complete documentation #' Calculate total #' @param x Numeric values to sum #' @return A numeric value representing the sum #' @examples #' calc_total(1:10) #' @export calc_total <- function(x) sum(x)
Useful Tools
- Format titles with proper capitalizationtools::toTitleCase()
- Find problematic URLsurlchecker::url_check()
- Fix redirecting URLsurlchecker::url_update()
- Create NEWS.mdusethis::use_news_md()
- Create cran-comments.mdusethis::use_cran_comments()
- Re-render README.md from README.Rmddevtools::build_readme()
- Add CoC without relative linksusethis::use_code_of_conduct()
- Ignore files in R package buildusethis::use_build_ignore()
- Add a package dependency to DESCRIPTIONusethis::use_package()
- Tidy up DESCRIPTION formattingusethis::use_tidy_description()
Final Verification Checklist
Use this checklist to ensure nothing is missed before submission:
Files and Structure
-
exists and documents changes for this versionNEWS.md -
exists with submission notescran-comments.md - If README.Rmd exists, it was edited (not README.md) and
was rundevtools::build_readme() - README includes valid install instructions (
)install.packages("pkgname") - README has no relative links (all links are full URLs or removed)
DESCRIPTION File
-
uses title caseTitle: -
has no redundant phrases ("A Toolkit for", "Tools for", "for R")Title: -
quotes all software/package names in single quotesTitle: -
is under 65 charactersTitle: -
does NOT start with "This package", package name, or "Functions for"Description: -
is 3-4 sentences explaining purpose and utilityDescription: -
quotes software/package/API names (including 'R') but NOT function namesDescription: -
expands all acronyms on first mentionDescription: -
uses double quotes only for publication titlesDescription: -
includes copyright holder withAuthors@R:
role[cph] - For Posit packages: Includes
person("Posit Software, PBC", role = c("cph", "fnd"), comment = c(ROR = "03wc8by49")) - LICENSE year matches current submission year
Function Documentation
- All exported functions have
documentation@return - All exported functions with meaningful returns have
@examples - No example sections use commented-out code
- Examples avoid
unless truly necessary\dontrun{} - Examples requiring suggested packages use
or@examplesIf
guardsif - Un-exported functions with examples use
notation or:::@noRd
URLs and Links
-
was runurlchecker::url_check() - All URLs use https protocol (no http links)
- No redirecting URLs (except aspirational CRAN badge URLs)
- Aspirational URLs (CRAN badges, etc.) are left as-is
- No relative links in README that reference
files.Rbuildignore
Optional but Recommended
- If concerns about method references, added preemptive note to
cran-comments.md - Reviewed bundled file licensing if including third-party files