Convex + Better Auth Dual-Database Architecture

Problem

When using Better Auth with Convex, users exist in TWO separate locations:

1. Better Auth component tables:

   betterAuth.user

   ,

   betterAuth.account

   ,

   betterAuth.session

2. App's users table: Your custom

   users

   table in the main schema

This causes confusing errors like "User not found" when the user exists in one location but not the other.

Context / Trigger Conditions

• "User not found" during login or password reset, but you see the user in your app's database
• User can't authenticate despite having a record in the

  users

  table
• Need to manually create an admin user in production
• Debugging auth flows where users should exist but operations fail
• Export shows users in

  _components/betterAuth/user/documents.jsonl

  separate from

  users/documents.jsonl

Architecture

┌─────────────────────────────────────────┐
│           Better Auth Component          │
│  ┌─────────────┐  ┌──────────────────┐  │
│  │ user table  │  │ account table    │  │
│  │ - email     │  │ - password hash  │  │
│  │ - name      │  │ - providerId     │  │
│  │ - verified  │  │ - userId         │  │
│  └─────────────┘  └──────────────────┘  │
└─────────────────────────────────────────┘
                    │
                    │ Login/Auth happens here
                    ▼
┌─────────────────────────────────────────┐
│           App's users table              │
│  - email                                 │
│  - name                                  │
│  - isAdmin                               │
│  - subscriptionStatus                    │
│  - (business-specific fields)            │
└─────────────────────────────────────────┘
     Synced via syncFromAuth mutation

Key Points

1. Authentication uses Better Auth tables ONLY

   • Login validates against

     betterAuth.user

     and

     betterAuth.account

   • Password hashes are stored in

     betterAuth.account

   • Sessions are in

     betterAuth.session

2. App's users table is for business logic

   • Stores app-specific fields (isAdmin, subscriptionStatus, etc.)
   • Must be synced AFTER Better Auth user is created
   • Sync happens via a mutation like

     syncFromAuth

3. Component tables can't be directly accessed

   • Can't write mutations that query

     betterAuth.user

   • Can't import directly to component tables via

     convex import --table

   • Must use export/modify/import workflow for manual changes

Solution: Creating Users Manually

Step 1: Create Better Auth user (via API)

curl -X POST "https://yourapp.com/api/auth/sign-up/email" \
  -H "Content-Type: application/json" \
  -d '{
    "email": "admin@example.com",
    "password": "your-password",
    "name": "Admin User"
  }'

Step 2: Create app user (via Convex mutation)

// convex/adminSetup.ts
export const createAdminUser = mutation({
  args: { email: v.string(), name: v.string(), setupSecret: v.string() },
  handler: async (ctx, args) => {
    // Verify secret
    if (args.setupSecret !== process.env.ADMIN_SECRET) {
      throw new Error("Unauthorized");
    }

    const userId = await ctx.db.insert("users", {
      email: args.email,
      name: args.name,
      isAdmin: true,
      subscriptionStatus: "ACTIVE",
    });
    return { userId };
  },
});

Step 3: Run the mutation

npx convex run --prod adminSetup:createAdminUser \
  '{"email": "admin@example.com", "name": "Admin", "setupSecret": "your-secret"}'

Solution: Deleting/Modifying Better Auth Users

Since you can't access component tables directly:

1. Export production data

   npx convex export --prod --path /tmp/convex-export
   

2. Extract and modify

   unzip /tmp/convex-export -d /tmp/convex-data
   # Edit _components/betterAuth/user/documents.jsonl
   # Edit _components/betterAuth/account/documents.jsonl
   

3. Reimport

   # Recreate zip with modifications
   cd /tmp/convex-data && zip -r ../convex-modified.zip .
   npx convex import --prod --replace-all -y /tmp/convex-modified.zip
   

Verification

• Check both tables when debugging:

  users/documents.jsonl

  AND

  _components/betterAuth/user/documents.jsonl

• User must exist in BOTH locations for full functionality
• Better Auth user allows authentication
• App user allows business logic (admin access, subscriptions, etc.)

Notes

• The

  syncFromAuth

  pattern is common: on first login, copy Better Auth user to app table
• ADMIN_EMAIL env var should be set in Convex (via

  npx convex env set

  ) not just .env.local
• Password hashes in

  betterAuth.account

  use format

  salt:hash

  (scrypt-based)
• Turnstile CAPTCHA may be client-side only - API calls can bypass it

Related Issues

• INTERNAL_API_SECRET must be set in BOTH Convex AND your hosting platform (Railway/Vercel)
• Magic link and password reset both require user to exist in Better Auth first