Auto-claude-code-research-in-sleep paper-write

Draft LaTeX paper section by section from an outline. Use when user says \"写论文\", \"write paper\", \"draft LaTeX\", \"开始写\", or wants to generate LaTeX content from a paper plan.

install
source · Clone the upstream repo
git clone https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep
Claude Code · Install into ~/.claude/skills/
T=$(mktemp -d) && git clone --depth=1 https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep "$T" && mkdir -p ~/.claude/skills && cp -r "$T/skills/skills-codex-claude-review/paper-write" ~/.claude/skills/wanshuiyin-auto-claude-code-research-in-sleep-paper-write-67d561 && rm -rf "$T"
manifest: skills/skills-codex-claude-review/paper-write/SKILL.md
source content

Override for Codex users who want Claude Code, not a second Codex agent, to act as the reviewer. Install this package after

skills/skills-codex/*
.

Paper Write: Section-by-Section LaTeX Generation

Draft a LaTeX paper based on: $ARGUMENTS

Constants

  • REVIEWER_MODEL =
    claude-review
    — Claude reviewer invoked through the local
    claude-review
    MCP bridge. Set
    CLAUDE_REVIEW_MODEL
    if you need a specific Claude model override.
  • TARGET_VENUE =
    ICLR
    — Default venue. Supported:
    ICLR
    ,
    NeurIPS
    ,
    ICML
    . Determines style file and formatting.
  • ANONYMOUS = true — If true, use anonymous author block. Set
    false
    for camera-ready.
  • MAX_PAGES = 9 — Main body page limit. Counts from first page to end of Conclusion section. References and appendix are NOT counted.
  • DBLP_BIBTEX = true — Fetch real BibTeX from DBLP/CrossRef instead of LLM-generated entries. Eliminates hallucinated citations. Zero install required. Set
    false
    to use legacy behavior (LLM search +
    [VERIFY]
    markers).

Inputs

  1. PAPER_PLAN.md — outline with claims-evidence matrix, section plan, figure plan (from
    /paper-plan
    )
  2. NARRATIVE_REPORT.md — the research narrative (primary source of content)
  3. Generated figures — PDF/PNG files in
    figures/
    (from
    /paper-figure
    )
  4. LaTeX includes
    figures/latex_includes.tex
    (from
    /paper-figure
    )
  5. Bibliography — existing
    .bib
    file, or will create one

If no PAPER_PLAN.md exists, ask the user to run

/paper-plan
first or provide a brief outline.

Templates

Venue-Specific Setup

The skill includes conference templates in

templates/
. Select based on TARGET_VENUE:

ICLR:

\documentclass{article}
\usepackage{iclr2026_conference,times}
% \iclrfinalcopy  % Uncomment for camera-ready

NeurIPS:

\documentclass{article}
\usepackage[preprint]{neurips_2025}
% \usepackage[final]{neurips_2025}  % Camera-ready

ICML:

\documentclass[accepted]{icml2025}
% Use [accepted] for camera-ready

Project Structure

Generate this file structure:

paper/
├── main.tex                    # master file (includes sections)
├── iclr2026_conference.sty     # or neurips_2025.sty / icml2025.sty
├── math_commands.tex           # shared math macros
├── references.bib              # bibliography (filtered — only cited entries)
├── sections/
│   ├── 0_abstract.tex
│   ├── 1_introduction.tex
│   ├── 2_related_work.tex
│   ├── 3_method.tex            # or preliminaries, setup, etc.
│   ├── 4_experiments.tex
│   ├── 5_conclusion.tex
│   └── A_appendix.tex          # proof details, extra experiments
└── figures/                    # symlink or copy from project figures/

Section files are FLEXIBLE: If the paper plan has 6-8 sections, create corresponding files (e.g.,

4_theory.tex
,
5_experiments.tex
,
6_analysis.tex
,
7_conclusion.tex
).

Workflow

Step 0: Backup and Clean

If

paper/
already exists, back up to
paper-backup-{timestamp}/
before overwriting. Never silently destroy existing work.

CRITICAL: Clean stale files. When changing section structure (e.g., 5 sections → 7 sections), delete section files that are no longer referenced by

main.tex
. Stale files (e.g., old
5_conclusion.tex
left behind when conclusion moved to
7_conclusion.tex
) cause confusion and waste space.

Step 1: Initialize Project

  1. Create
    paper/
    directory
  2. Copy venue template from
    templates/
    — the template already includes:
    • All standard packages (amsmath, hyperref, cleveref, booktabs, etc.)
    • Theorem environments with
      \crefname{assumption}
      fix
    • Anonymous author block
  3. Generate
    math_commands.tex
    with paper-specific notation
  4. Create section files matching PAPER_PLAN structure

Author block (anonymous mode):

\author{Anonymous Authors}

Step 2: Generate math_commands.tex

Create shared math macros based on the paper's notation:

% math_commands.tex — shared notation
\newcommand{\R}{\mathbb{R}}
\newcommand{\E}{\mathbb{E}}
\DeclareMathOperator*{\argmin}{arg\,min}
\DeclareMathOperator*{\argmax}{arg\,max}
% Add paper-specific notation here

Step 3: Write Each Section

Process sections in order. For each section:

  1. Read the plan — what claims, evidence, citations belong here
  2. Read NARRATIVE_REPORT.md — extract relevant content, findings, and quantitative results
  3. Draft content — write complete LaTeX (not placeholders)
  4. Insert figures/tables — use snippets from
    figures/latex_includes.tex
  5. Add citations — use
    \citep{}
    /
    \citet{}
    (all three venues use
    natbib
    )

Section-Specific Guidelines

§0 Abstract:

  • Must be self-contained (understandable without reading the paper)
  • Structure: problem → approach → key result → implication
  • Include one concrete quantitative result
  • 150-250 words (check venue limit)
  • No citations, no undefined acronyms
  • No
    \begin{abstract}
    — that's in main.tex

§1 Introduction:

  • Open with a compelling hook (1-2 sentences, problem motivation)
  • State the gap clearly ("However, ...")
  • List contributions as a numbered or bulleted list
  • End with a brief roadmap ("The rest of this paper is organized as...")
  • Include the main result figure if space allows
  • Target: 1.5 pages

§2 Related Work:

  • MINIMUM 1 full page (3-4 substantive paragraphs). Short related work sections are a common reviewer complaint.
  • Organize by category using
    \paragraph{Category Name.}
  • Each category: 1 paragraph summarizing the line of work + 1-2 sentences positioning this paper
  • Do NOT just list papers — synthesize and compare
  • End each paragraph with how this paper relates/differs

§3 Method / Preliminaries / Setup:

  • Define notation early (reference math_commands.tex)
  • Use
    \begin{definition}
    ,
    \begin{theorem}
    environments for formal statements
  • For theory papers: include proof sketches of key results in main body, full proofs in appendix
  • For theory papers: include a comparison table of prior bounds vs. this paper
  • Include algorithm pseudocode if applicable (
    algorithm2e
    or
    algorithmic
    )
  • Target: 1.5-2 pages

§4 Experiments:

  • Start with experimental setup (datasets, baselines, metrics, implementation details)
  • Main results table/figure first
  • Then ablations and analysis
  • Every claim from the introduction must have supporting evidence here
  • Target: 2.5-3 pages

§5 Conclusion:

  • Summarize contributions (NOT copy-paste from intro — rephrase)
  • Limitations (be honest — reviewers appreciate this)
  • Future work (1-2 concrete directions)
  • Ethics statement and reproducibility statement (if venue requires)
  • Target: 0.5 pages

Appendix:

  • Proof details (full proofs of main-body theorems)
  • Additional experiments, ablations
  • Implementation details, hyperparameter tables
  • Additional visualizations

Step 4: Build Bibliography

CRITICAL: Only include entries that are actually cited in the paper.

  1. Scan all
    \citep{}
    and
    \citet{}
    references in the drafted sections
  2. Build a citation key list
  3. For each citation key:
    • Check existing
      .bib
      files in the project/narrative docs
    • If not found and DBLP_BIBTEX = true, use the verified fetch chain below
    • If not found and DBLP_BIBTEX = false, search arXiv/Scholar for correct BibTeX
    • NEVER fabricate BibTeX entries — mark unknown ones with
      [VERIFY]
      comment
  4. Write
    references.bib
    containing ONLY cited entries (no bloat)

Verified BibTeX Fetch (when DBLP_BIBTEX = true)

Three-step fallback chain — zero install, zero auth, all real BibTeX:

Step A: DBLP (best quality — full venue, pages, editors)

# 1. Search by title + first author
curl -s "https://dblp.org/search/publ/api?q=TITLE+AUTHOR&format=json&h=3"
# 2. Extract DBLP key from result (e.g., conf/nips/VaswaniSPUJGKP17)
# 3. Fetch real BibTeX
curl -s "https://dblp.org/rec/{key}.bib"

Step B: CrossRef DOI (fallback — works for arXiv preprints)

# If paper has a DOI or arXiv ID (arXiv DOI = 10.48550/arXiv.{id})
curl -sLH "Accept: application/x-bibtex" "https://doi.org/{doi}"

Step C: Mark

[VERIFY]
(last resort) If both DBLP and CrossRef return nothing, mark the entry with
% [VERIFY]
comment. Do NOT fabricate.

Why this matters: LLM-generated BibTeX frequently hallucinates venue names, page numbers, or even co-authors. DBLP and CrossRef return publisher-verified metadata. Upstream skills (

/research-lit
,
/novelty-check
) may mention papers from LLM memory — this fetch chain is the gate that prevents hallucinated citations from entering the final
.bib
.

Automated bib cleaning — use this Python pattern to extract only cited entries:

import re
# 1. Grep all \citep{...} and \citet{...} from all .tex files
# 2. Extract unique keys (handle multi-cite like \citep{a,b,c})
# 3. Parse the full .bib file, keep only entries whose key is in the cited set
# 4. Write the filtered bib

This prevents bib bloat (e.g., 948 lines → 215 lines in testing).

Citation verification rules (from claude-scholar + Imbad0202):

  1. Every BibTeX entry must have: author, title, year, venue/journal
  2. Prefer published venue versions over arXiv preprints (if published)
  3. Use consistent key format:
    {firstauthor}{year}{keyword}
    (e.g.,
    ho2020denoising
    )
  4. Double-check year and venue for every entry
  5. Remove duplicate entries (same paper with different keys)

Step 5: De-AI Polish (from kgraph57/paper-writer-skill)

After drafting all sections, scan for common AI writing patterns and fix them:

Content patterns to fix:

  • Significance inflation ("groundbreaking", "revolutionary" → use measured language)
  • Formulaic transitions ("In this section, we..." → remove or vary)
  • Generic conclusions ("This work opens exciting new avenues" → be specific)

Language patterns to fix (watch words):

  • Replace: delve, pivotal, landscape, tapestry, underscore, noteworthy, intriguingly
  • Remove filler: "It is worth noting that", "Importantly,", "Notably,"
  • Avoid rule-of-three lists ("X, Y, and Z" appearing repeatedly)
  • Don't start consecutive sentences with "This" or "We"

Step 6: Cross-Review with REVIEWER_MODEL

Send the complete draft to Claude review:

mcp__claude-review__review_start:
  prompt: |
    Review this [VENUE] paper draft (main body, excluding appendix).

    Focus on:
    1. Does each claim from the intro have supporting evidence?
    2. Is the writing clear, concise, and free of AI-isms?
    3. Any logical gaps or unclear explanations?
    4. Does it fit within [MAX_PAGES] pages (to end of Conclusion)?
    5. Is related work sufficiently comprehensive (≥1 page)?
    6. For theory papers: are proof sketches adequate?
    7. Are figures/tables clearly described and properly referenced?

    For each issue, specify: severity (CRITICAL/MAJOR/MINOR), location, and fix.

    [paste full draft text]

After this start call, immediately save the returned

jobId
and poll
mcp__claude-review__review_status
with a bounded
waitSeconds
until
done=true
. Treat the completed status payload's
response
as the reviewer output, and save the completed
threadId
for any follow-up round.

Apply CRITICAL and MAJOR fixes. Document MINOR issues for the user.

Step 7: Reverse Outline Test (from Research-Paper-Writing-Skills)

After drafting all sections:

  1. Extract topic sentences — pull the first sentence of every paragraph
  2. Read them in sequence — they should form a coherent narrative on their own
  3. Check claim coverage — every claim from the Claims-Evidence Matrix must appear
  4. Check evidence mapping — every experiment/figure must support a stated claim
  5. Fix gaps — if a topic sentence doesn't advance the story, rewrite the paragraph

Step 8: Final Checks

Before declaring done:

  • All
    \ref{}
    and
    \label{}
    match (no undefined references)
  • All
    \citep{}
    /
    \citet{}
    have corresponding BibTeX entries
  • No author information in anonymous mode
  • Figure/table numbering is correct
  • Page count within MAX_PAGES (main body to Conclusion end)
  • No TODO/FIXME/XXX markers left in the text
  • No
    [VERIFY]
    markers left unchecked
  • Abstract is self-contained (understandable without reading the paper)
  • Title is specific and informative (not generic)
  • Related work is ≥1 full page
  • references.bib contains ONLY cited entries (no bloat)
  • No stale section files — every .tex in
    sections/
    is
    \input
    ed by
    main.tex
  • Section files match main.tex — file numbering and
    \input
    paths are consistent

Output Protocols

Follow these shared protocols for all output files:

Key Rules

  • Large file handling: If the Write tool fails due to file size, immediately retry using Bash (

    cat << 'EOF' > file
    ) to write in chunks. Do NOT ask the user for permission — just do it silently.

  • Do NOT generate author names, emails, or affiliations — use anonymous block or placeholder

  • Write complete sections, not outlines — the output should be compilable LaTeX

  • One file per section — modular structure for easy editing

  • Every claim must cite evidence — cross-reference the Claims-Evidence Matrix

  • Compile-ready — the output should compile with

    latexmk
    without errors (modulo missing figures)

  • No over-claiming — use hedging language ("suggests", "indicates") for weak evidence

  • Venue style matters — all three venues (ICLR/NeurIPS/ICML) use

    natbib
    (
    \citep
    /
    \citet
    )

  • Page limit = main body to Conclusion — references and appendix do NOT count

  • Clean bib — references.bib must only contain entries that are actually

    \cite
    d

  • Section count is flexible — match PAPER_PLAN structure, don't force into 5 sections

  • Backup before overwrite — never destroy existing

    paper/
    directory without backing up

Writing Quality Reference

Principles from Research-Paper-Writing-Skills:

  1. One message per paragraph — each paragraph makes exactly one point
  2. Topic sentence first — the first sentence states the paragraph's message
  3. Explicit transitions — connect paragraphs with logical connectors
  4. Reverse outline test — extract topic sentences; they should form a coherent narrative

De-AI patterns from kgraph57/paper-writer-skill:

  1. No AI watch words — delve, pivotal, landscape, tapestry, underscore
  2. No significance inflation — groundbreaking, revolutionary, paradigm shift
  3. No formulaic structures — vary sentence openings and transitions

Acknowledgements

Writing methodology adapted from Research-Paper-Writing-Skills (CCF award-winning methodology). Citation verification from claude-scholar and Imbad0202/academic-research-skills. De-AI polish from kgraph57/paper-writer-skill. Backup mechanism from baoyu-skills.